Batman - A Bayesian Tool for Methylation Analysis | Tool name | Batman - A Bayesian Tool for Methylation Analysis |
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| URL | http://td-blade.gurdon.cam.ac.uk/software/batman/ |
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| Important features | 1) It is a new, robust algorithm which relies on the effect of varying densities of methylated CpGs on MeDIP enrichment.
2) It performs DNA methylome analyses, as it will allow more effective profiling, including CpG-poor regions. |
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| Citations | Down TA, Rakyan VK, Turner DJ, Flicek P, Li H, Kulesha E, Gr\E4f S, Johnson N,
Herrero J, Tomazou EM, Thorne NP, B\E4ckdahl L, Herberth M, Howe KL, Jackson DK,
Miretti MM, Marioni JC, Birney E, Hubbard TJ, Durbin R, Tavar\E9 S, Beck S. A
Bayesian deconvolution strategy for immunoprecipitation-based DNA methylome
analysis. Nat Biotechnol. 2008 Jul;26(7):779-85. PubMed PMID: 18612301; PubMed
Central PMCID: PMC2644410.
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| Year of publication | 2008 |
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| Rank by usage frequency | 100 |
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| Comments | |
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| Function | ChIP seq analysis |
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| Category | Free, Downloadable |
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| License | GNU LGPL |
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| Operating language | Java |
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| Platform | Illumina/Solexa |
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